Featured Publications
Get to know some of the latest publications by our faculties.
Earthworms Drastically and Differentially Modify the Bacteriomes and Mycobiomes of Sewage Sludge
May 10, 2026
Earthworms Drastically and Differentially Modify the Bacteriomes and Mycobiomes of Sewage Sludge
seqLens: Optimizing Language Models for Genomic Predictions
June 25, 2026
seqLens: Optimizing Language Models for Genomic Predictions
On the p-adic valuations of values of Legendre polynomials
May 11, 2026
On the p-adic valuations of values of Legendre polynomials
Production and detection of cold antihydrogen atoms
September 18, 2002
Production and detection of cold antihydrogen atoms
Locus-specific HERV expression associated with hepatocellular carcinoma
August 19, 2025
Human endogenous retroviruses (HERVs) harbor accessory proteins that influence cellular processes and have been linked to a wide variety of diseases, including cancer. This study investigates locus-specific HERV expression and its association with gene dysregulation in hepatocellular carcinoma (HCC), a highly prevalent and deadly form of liver cancer worldwide.
Analysis of metagenomic data
August 19, 2025
Metagenomics has revolutionized our understanding of microbial communities, offering unprecedented insights into their genetic and functional diversity across Earth’s diverse ecosystems.
546 Therapeutic beta-lactam dosages and broad-spectrum antibiotics are associated with short-term reductions in microbial richness and beta-diversity
October 1, 2022
People with cystic fibrosis have morbid pulmonary exacerbations. Antibiotics are common, yet the beta-lactam doses administered are less than half the time.
Host taxonomy determines the composition, structure, and diversity of the earthworm cast microbiome under homogenous feeding conditions
August 4, 2022
Host evolutionary history is a key factor shaping the earthworm cast microbiome, although its effect can be shadowed by the earthworm’s diet.
Induction of mastitis by cow-to-mouse fecal and milk microbiota transplantation causes microbiome dysbiosis and genomic functional perturbation in mice
July 6, 2022
To understand the host-tropism phenomena of bovine-tropic mastitis microbiomes, we developed a cow-to-mouse mastitis model.
Differential expression of single-cell RNA-seq data using Tweedie models
June 2, 2022
To model the technological variability in cross-platform scRNA-seq data, here we propose to use Tweedie generalized linear models.
Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
March 15, 2021
We produced chromosome-level genome assemblies for A. coluzzii and A. arabiensis using Oxford Nanopore sequencing technology and Hi-C scaffolding approach.
Impact of Antibiotics on the Lung Microbiome and Lung Function in Children With Cystic Fibrosis 1 Year After Hospitalization for an Initial Pulmonary Exacerbation
September 12, 2022
The purpose of this study was to evaluate changes in the microbiome and lung function in people with CF over 1 year after an initial pulmonary exacerbation.